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Extrants de recherche

Notre groupe crée une large variété de travaux, parmi lesquels des articles et des livres académiques, des documents pour le grand public, et notre blog (seulement en anglais pour le moment). Nous donnons aussi des conférences pour spécialistes et pour le public, dans le monde entier, et produisons des logiciels en open-source largement utilisés. Ci-dessous, veuillez trouver une liste de nos travaux.

Daniel G. Swaim
Ancien étudiant master
Under contract. Causes and Probability in Evolution [working title]. Cambridge: Cambridge University Press.

An opinionated introduction to the debate over probability, statistics, and causation in the foundations of evolutionary theory, to be written for Cambridge’s Elements series.

Forthcoming (under contract). “How Not to Fight About Theory: The Debate Between Biometry and Mendelism in Nature, 1890–1915.” In The Dynamics of Science: Computational Frontiers in History and Philosophy of Science, Ramsey, G. & De Block, A., eds. Pittsburgh: University of Pittsburgh Press.

A book chapter looking at the network of discourse in debates over genetics in the correspondence pages of Nature at the turn of the twentieth century.

A presentation of some contemporary results from divergence time estimation and their impact on interpretations of chance in the philosophy of biology.

Reviewed work: Rosenblatt, L.B. 2018. Buckets from an English Sea: 1832 and the Making of Charles Darwin. Oxford: Oxford University Press.

& . How to Do Digital Philosophy of Science.” Philosophy of Science 85 (5): 930941.

Based on a symposium at the 2016 PSA, Grant and I offer some tips for those interested in engaging in digital projects in the philosophy of science.

Reviewed work: Archibald, J.D. 2017. Origins of Darwin’s Evolution: Solving the Species Puzzle Through Time and Place. New York: Columbia University Press.

Darwin had many influences, but perhaps the most significant on the structure of the Origin was Sir John Herschel’s Preliminary Discourse. I explore the shape and nature of that influence here.

& . The Economy of Nature: The Structure of Evolution in Linnaeus, Darwin, and Toward the Extended Synthesis.” European Journal for Philosophy of Science 8 (3): 435454.

We consider the status of the economy of nature as a structuring concept in biological theory, from Darwin to the present, with reference to current debates over structural realism.

Reviewed work: Richards, R.J. & Ruse, M. 2016. Debating Darwin. Chicago: University of Chicago Press.

. Is Genetic Drift a Force? Synthese 194 (6): 19671988.

A brief paper which considers two arguments against the tenability of considering genetic drift to be analogous to a Newtonian force – that drift lacks a specifiable direction, and that it is constitutive of all evolving systems, rather than an “external” force. In defense of the force metaphor, I find both these arguments to be problematic. ERRATUM: The Lewens (2010) citation should refer to “The Natures of Selection.”

, , , , , , , & . Cognitive Phenotypes and the Evolution of Animal Decisions.” Trends in Ecology and Evolution 31 (11): 850859.

Work with a group of biologists, coordinated through the National Evolutionary Synthesis Center. Offers a new framework for understanding animal decisions which takes into account insights from human psychology. The figshare data here describes a textual analysis that was removed from the article in draft.

& . “Chance in Evolution from Darwin to Contemporary Biology.” In Chance in Evolution, Ramsey, G. & Pence, C.H., eds. Chicago: University of Chicago Press , pp.  111.

The editors’ introduction to our edited volume, covering the scope of the work and offering some thoughts on the taxonomy of chance in evolution.

Ramsey, G. & Pence, C.H., eds. . Chance in Evolution. Chicago: University of Chicago Press.

An edited volume with contributions from philosophers, historians, biologists, and theologians on the role of “chance” in evolutionary theory.

& . evoText: A New Tool for Analyzing the Biological Sciences.” Studies in History and Philosophy of Biological and Biomedical Sciences 57: 8387.

An application note introducing the evoText project, a text-mining tool for analyzing the biological journal literature.

An application note introducing RLetters, a tool designed to allow the textual analysis of large journal article corpora.

& . Is Organismic Fitness at the Basis of Evolutionary Theory? Philosophy of Science 82 (5): 10811091.

It is often claimed (e.g., in a recent article by Sober (2013)) that trait fitness is where the genuine “action” can be found in evolutionary theory, and that individual fitness is theoretically secondary. We clarify this relationship by distinguishing two roles that fitness plays in biology, and arguing that individual fitness lies at the conceptual foundation of ascriptions of the fitness of traits.

. The Early History of Chance in Evolution.” Studies in History and Philosophy of Science 50: 4858.

In this paper, I argue for a new understanding of the development of chance in evolution, from the from the work of Darwin through Galton to two of Galton’s students, Karl Pearson and W.F.R. Weldon. (Invited to appear in a special issue of Studies in the History and Philosophy of Science containing selected proceedings from &HPS4.)

A commentary on a framework for ethical decision making in military genomic research by Mehlman and Li, in which I argue that significant caution is required, thanks to conceptual results from the philosophy of biology on the relationship between genotypes and phenotypes.

. The Many Chances of Charles Darwin [Essay Review].” Studies in History and Philosophy of Biological and Biomedical Sciences 53: 107110.

Essay review of: Johnson, C. 2015. Darwin’s Dice: The Idea of Chance in the Thought of Charles Darwin. Oxford: Oxford University Press.

. [Review of] Darwin’s Dice: The Idea of Chance in the Thought of Charles Darwin.” Reports of the National Center for Science Education 35 (6): 11.

Reviewed work: Johnson, C. 2015. Darwin’s Dice: The Idea of Chance in the Thought of Charles Darwin. Oxford: Oxford University Press.

Reviewed work: Wilkins, J.S. 2009. Species: A History of the Idea. Berkeley: University of California Press.

An examination of the relationship between Darwin and Herschel’s philosophy of science. I argue for a new reading of this connection, based on a careful reading of Herschel and his critiques of Darwin’s theory.

& . A New Foundation for the Propensity Interpretation of Fitness.” British Journal for the Philosophy of Science 64 (4): 851881.

We apply some results from mathematical biology to show that there is no reason to think that a modified formulation of the propensity interpretation of fitness cannot survive several common counterexamples to the traditional PIF.

& . Fitness: Philosophical Problems.” eLS.

An entry on the philosophical interpretation of fitness for Wiley’s Encyclopedia of the Life Sciences.

Reviewed work: Müller-Wille, S. & Rheinberger, Hans-Jörg. 2012. A Cultural History of Heredity. Chicago: University of Chicago Press.

, , , and . A Path to Success? A Review of Evolution, Development, and the Predictable Genome by David L. Stern.” Evolution and Development 15 (1): 8082.

Reviewed work: Stern, D.L. 2011. Evolution, Development, and the Predictable Genome. Greenwood Village, CO: Roberts and Company Publishers.

, & . MTBindingSim: Simulate Protein Binding to Microtubules.” Bioinformatics 28 (3): 441443.

An application note introducing MTBindingSim, a tool for classroom simulation of binding to microtubules.

& . Oyun: A New, Free Program for Iterated Prisoner’s Dilemma Tournaments in the Classroom.” Evolution: Education and Outreach 5 (3): 467476.

An application note describing Oyun, software for running iterated prisoner’s dilemma tournaments.

. ‘Describing Our Whole Experience’: The Statistical Philosophies of W.F.R. Weldon and Karl Pearson.” Studies in History and Philosophy of Biological and Biomedical Sciences 42 (4): 475485.

I argue here for a new view of the philosophy of W.F.R. Weldon, distinct in interesting and important ways from the positivism of Karl Pearson.

. Nietzsche’s Aesthetic Critique of Darwin.” History and Philosophy of the Life Sciences 33 (2): 165190.

A reinterpretation of Nietzsche’s critique of Darwin, seen in the light of his early work on aesthetics. (Several of the Nietzsche citations in the published version are missing, despite my best efforts. The preprint has them all, for those interested.)

, , , , and . [Review of] On the Origin of Stories: Evolution, Cognition, and Fiction.” The Quarterly Review of Biology 86 (2): 137138.

Reviewed work: Boyd, B. 2009. On the Origin of Stories: Evolution, Cognition, and Fiction. Cambridge, MA: Harvard University Press.

, , , , , and . [Review of] Elliott Sober: Did Darwin Write the Origin Backwards? Philosophical Essays on Darwin’s Theory.” Philosophy of Science 78 (4): 705709.

Reviewed work: Sober, E. 2011. Did Darwin Write the Origin Backwards? Philosophical Essays on Darwin’s Theory. Amherst, NY: Prometheus.

, , , and . [Review of] Darwinian Populations and Natural Selection.” The Quarterly Review of Biology 85 (4): 499500.

Reviewed work: Godfrey-Smith, P. 2009. Darwinian Popluations and Natural Selection. Oxford: Oxford University Press.

In preparation. Putting Process and Product Conceptions of Natural Selection and Genetic Drift to the Test.

This paper argues for two claims. First, the question of whether selection and drift should be defined as processes or as products is independent of their causal efficacy. Second, there exist biological cases that can be used to separate these process and product notions. Two cases presented weigh in favor of process definitions, though this does not suffice to resolve the question.

Conférences

Prochains engagements
  • Pence, Lean, et Rivelli: “Digital Humanities as Empirical Philosophy of Science,” XPhiSci (Experimental Philosophy of Science) Workshop, Aarhus University, 15–16 octobre, 2019
  • Pence: “Analyzing the Biological Literature with evoText,” Université de Montréal, 31 octobre–1 novembre, 2019
  • Pence: “Of Stirps and Chromosomes: Early Attempts at Grounding Statistical Inheritance,” New Directions in the Historiography of Genetics, Cohn Institute, Tel Aviv University, 17–19 novembre, 2019
  • Pence: “The Challenge of Breadth: From Darwin to Big Data,” European Molecular Biology Laboratory (EMBL) Graduate Conference, Heidelberg, Germany, 27–30 novembre, 2019
  • Pence: Titre à déterminer, Historical Epistemology of the Final Theory Program, Max Planck Institute for the History of Science, Berlin, 2–4 décembre, 2019
  • Pence: Titre à déterminer, séminaire PHILBIO, IHPST, Paris 1-Sorbonne, 19 mai, 2020

Le laboratoire et toujours intéressé par présenter notre recherche à quiconque veut l’écouter. N’hésitez pas à envoyer un courriel à Pr. Pence et on essaiera d’arranger quelque chose.

Conférences passées

From the Biological World to Statistical Theories: Nineteenth-Century Lessons for Twenty-First-Century Philosophy of Biology

Intervenant·e·(s) du laboratoire: Pence
EPSA 2019 | Dates de la réunion: September 11–14, 2019 | Date de la conférence: September 12, 2019, 9:00am

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John Herschel and Nineteenth-Century Scientific Methodology (round-table)

Intervenant·e·(s) du laboratoire: Pence
HSS 2019 | Dates de la réunion: July 23–27, 2019 | Date de la conférence: July 26, 2019, 12:00pm

From the Biological World to Statistical Theories: Nineteenth-Century Lessons for Twenty-First-Century Philosophy of Biology

Intervenant·e·(s) du laboratoire: Pence
ISHPSSB 2019 | Dates de la réunion: July 7-12, 2019 | Date de la conférence: July 10, 2019, 3:00pm

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Reversion and Ancestry in Early Genetics

Intervenant·e·(s) du laboratoire: Pence
UK iHPS Workshop, Exeter | Dates de la réunion: June 20–21, 2019 | Date de la conférence: June 20, 2019, 4:30pm

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Moral Responsibility After Robots

Intervenant·e·(s) du laboratoire: Pence
Faire exister les IA-robots-cyborgs: Un nouveau projet humaniste pour l’Europe ? | Date de la conférence: April 30, 2019, 3:00pm

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Why Should We Value Biodiversity?

Intervenant·e·(s) du laboratoire: Pence
Colloque du Cercle des Étudiants en Philosophie | Date de la conférence: April 23, 2019, 2:00pm

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Reversion and Deep Ancestry in Early Genetics

Intervenant·e·(s) du laboratoire: Pence
Journée d'étude, Université Paris 7 — Diderot | Date de la conférence: April 11, 2019, 11:00am

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The Boundaries of Scientific Communities

Intervenant·e·(s) du laboratoire: Pence
Ethics/Philosophy of Technology Section, TU Delft | Date de la conférence: April 8, 2019, 3:00pm

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The Wonderful Form of Cosmic Order: Bringing Statistics to Evolution

Intervenant·e·(s) du laboratoire: Pence
UCLouvain CEFISES Work in Progress Seminar | Date de la conférence: February 27, 2019, 3:00pm

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Causation and Metaphysics in Evolutionary Biology

Intervenant·e·(s) du laboratoire: Pence
KU Leuven, Center for Logic and Philosophy of Science | Date de la conférence: December 7, 2018, 3:00pm

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The Development of Darwin’s Views of Chance

Intervenant·e·(s) du laboratoire: Pence
Aarhus University, Center for Science Studies | Date de la conférence: October 10, 2018, 2:15pm

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An Introduction to Historical Explanation

Intervenant·e·(s) du laboratoire: Pence
UCLouvain Historical Explanation Seminar | Date de la conférence: October 3, 2018, 3:00pm

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Darwin on Mind, Ethics, and Animals

Intervenant·e·(s) du laboratoire: Pence
UCLouvain GRICE Seminar | Date de la conférence: September 26, 2018, 3:00pm

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Chance, Statistics, and Experiment in Early Evolutionary Biology

Intervenant·e·(s) du laboratoire: Pence
History of Philosophy of Science (HOPOS) 2018 | Dates de la réunion: July 9–12, 2018 | Date de la conférence: July 10, 2018, 3:30pm

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C'mon, Neil! Why Good Philosophy of Science is Part of Good Science Teaching and Science

Intervenant·e·(s) du laboratoire: Pence
National Science Teachers Association Regional Meeting, 2017 | Dates de la réunion: November 30–December 2, 2017 | Date de la conférence: December 2, 2017, 8:00am

Darwin and Evolution: Using Historical Critiques and Responses to Address Student Misunderstandings

Intervenant·e·(s) du laboratoire: Pence
National Science Teachers Association Regional Meeting, 2017 | Dates de la réunion: November 30–December 2, 2017 | Date de la conférence: December 1, 2017, 9:30am

Archives to Networks and Back Again (keynote)

Intervenant·e·(s) du laboratoire: Pence
THATCamp HSS 2017 | Date de la conférence: November 12, 2017, 12:00pm

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Syntheses that Weren’t: W.F.R. Weldon on Chromosomes

Intervenant·e·(s) du laboratoire: Pence
ISHPSSB 2017 | Dates de la réunion: July 16–21, 2017 | Date de la conférence: July 18, 2017, 9:00am

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Theories Under Stress: The Evolution of Early Genetics

Intervenant·e·(s) du laboratoire: Pence
University of Leeds HPS Centre Seminar | Date de la conférence: May 24, 2017, 3:15pm
Later published as “How Not to Fight About Theory: The Debate Between Biometry and Mendelism in Nature, 1890–1915”

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Theories Under Stress: The Evolution of Early Genetics

Intervenant·e·(s) du laboratoire: Pence
University College London | Date de la conférence: May 17, 2017, 5:00pm
Later published as “How Not to Fight About Theory: The Debate Between Biometry and Mendelism in Nature, 1890–1915”

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What Role for Fitness?

Intervenant·e·(s) du laboratoire: Pence
Deep South Philosophy of Biology, University of Alabama Birmingham | Dates de la réunion: March 31–April 1, 2017 | Date de la conférence: April 1, 2017, 8:45am

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Evolution and Chance

Intervenant·e·(s) du laboratoire: Pence
Darwin Day, Stephen F. Austin State University | Date de la conférence: February 10, 2017, 12:00pm

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Fitness and Prediction in Evolutionary Theory

Intervenant·e·(s) du laboratoire: Pence
London School of Economics | Date de la conférence: January 25, 2017, 5:00pm

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evoText and Philosophy of Science

Intervenant·e·(s) du laboratoire: Pence
Philosophy of Science Association 2016 | Dates de la réunion: November 3–5, 2016 | Date de la conférence: November 4, 2016, 1:30pm
Later published as “How to Do Digital Philosophy of Science”

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Theories Under Stress: The Evolution of Early Genetics

Intervenant·e·(s) du laboratoire: Pence
The Science of Evolution and the Evolution of the Sciences | Dates de la réunion: October 12–13, 2016 | Date de la conférence: October 13, 2016, 2:00pm
Later published as “How Not to Fight About Theory: The Debate Between Biometry and Mendelism in Nature, 1890–1915”

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The Economy of Nature and Structure in Evolution

Intervenant·e·(s) du laboratoire: Pence
KU Leuven Centre for Logic and Analytic Philosophy Seminar | Date de la conférence: October 11, 2016, 4:00pm
Later published as “The Economy of Nature: The Structure of Evolution in Linnaeus, Darwin, and Toward the Extended Synthesis”

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The Economy of Nature: Structure in Biology from Linnaeus, to Darwin, to the Modern Synthesis

Intervenant·e·(s) du laboratoire: Pence, Swaim
The History of Science and Scientific Realism | Dates de la réunion: February 19–21, 2016 | Date de la conférence: February 19, 2016, 2:30pm
Later published as “The Economy of Nature: The Structure of Evolution in Linnaeus, Darwin, and Toward the Extended Synthesis”

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What is Evolutionary Fitness For?

Intervenant·e·(s) du laboratoire: Pence
Mississippi State University Philosophy Department | Date de la conférence: November 6, 2015, 1:30pm

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Charles Darwin and Sir John F.W. Herschel

Intervenant·e·(s) du laboratoire: Pence
EPSA 2015 | Dates de la réunion: September 23–26, 2015 | Date de la conférence: September 23, 2015, 6:00pm
Later published as “Sir John F. W. Herschel and Charles Darwin: Nineteenth-Century Science and its Methodology”

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Charles Darwin and Sir John F.W. Herschel

Intervenant·e·(s) du laboratoire: Pence
CLMPS 2015 | Dates de la réunion: August 3–8, 2015 | Date de la conférence: August 7, 2015, 6:30pm
Later published as “Sir John F. W. Herschel and Charles Darwin: Nineteenth-Century Science and its Methodology”

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Prediction, Optimization, Chaos: The Role of Fitness

Intervenant·e·(s) du laboratoire: Pence
ISHPSSB 2015 | Dates de la réunion: July 5–10, 2015 | Date de la conférence: July 6, 2015, 9:00am

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evoText: A New Text Analysis Tool for the History and Philosophy of Biology

Intervenant·e·(s) du laboratoire: Pence
American Philosophical Association Pacific Division Meeting, 2015 | Dates de la réunion: April 1–4, 2015 | Date de la conférence: April 4, 2015, 1:00pm
Later published as “evoText: A New Tool for Analyzing the Biological Sciences”

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Is Organismic Fitness at the Basis of Evolutionary Theory?

Intervenant·e·(s) du laboratoire: Pence
Philosophy of Science Association 2014 | Dates de la réunion: November 6–9, 2014 | Date de la conférence: November 7, 2014, 1:30pm
Later published as “Is Organismic Fitness at the Basis of Evolutionary Theory?”

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Background: Attribution & Repression (in Cyberwarfare)

Intervenant·e·(s) du laboratoire: Pence
Cyberwarfare, Ethics, and International Humanitarian Law, International Committee of the Red Cross | Dates de la réunion: May 21–22, 2014 | Date de la conférence: May 21, 2014, 2:00pm

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Models, Probability, and the Deep Past

Intervenant·e·(s) du laboratoire: Pence
Models and Simulations 6 | Dates de la réunion: May 9–11, 2014 | Date de la conférence: May 10, 2014, 2:30pm
Later published as “Locating Uncertainty in Stochastic Evolutionary Models: Divergence Time Estimation”

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Coming to Terms with Chance in Evolution

Intervenant·e·(s) du laboratoire: Pence
Louisiana State University | Date de la conférence: February 3, 2014, 11:00am

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RLetters

Intervenant·e·(s) du laboratoire: Pence
NESCent Lunch Talk | Date de la conférence: December 5, 2013, 12:00pm
Later published as “RLetters: A Web-Based Application for Text Analysis of Journal Articles”

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Putting Process and Product Conceptions of Natural Selection and Genetic Drift to the Test

Intervenant·e·(s) du laboratoire: Pence
European Philosohy of Science Association 2013 | Dates de la réunion: August 28–31, 2013 | Date de la conférence: August 30, 2013, 9:30am

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Putting Process and Product Conceptions of Natural Selection and Genetic Drift to the Test

Intervenant·e·(s) du laboratoire: Pence
ISHPSSB 2013 | Dates de la réunion: July 7–12, 2013 | Date de la conférence: July 12, 2013, 9:00am

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It’s Okay to Call Genetic Drift a ‘Force’

Intervenant·e·(s) du laboratoire: Pence
American Philosophical Association Eastern Division Meeting, 2012 | Dates de la réunion: December 27–30, 2012 | Date de la conférence: December 29, 2012, 9:00am
Later published as “Is Genetic Drift a Force?”

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It’s Okay to Call Genetic Drift a ‘Force’

Intervenant·e·(s) du laboratoire: Pence
Philosophy of Science Association 2012 | Dates de la réunion: November 15–17, 2012 | Date de la conférence: November 15, 2012, 2:00pm
Later published as “Is Genetic Drift a Force?”

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Oyun: Prisoner’s Dilemma Tournaments in the Philosophy of Science

Intervenant·e·(s) du laboratoire: Pence
American Association of Philosophy Teachers 19th Biennial Workshop/Conference | Dates de la réunion: July 25–29, 2012 | Date de la conférence: July 27, 2012, 10:45am
Later published as “Oyun: A New, Free Program for Iterated Prisoner’s Dilemma Tournaments in the Classroom.”

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The Early History of Chance in Evolution: Causal and Statistical in the 1890s

Intervenant·e·(s) du laboratoire: Pence
History of Philosophy of Science (HOPOS) 2012 | Dates de la réunion: June 21–24, 2012 | Date de la conférence: June 22, 2012, 2:15pm
Later published as “The Early History of Chance in Evolution.”

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Software Demo: RLetters

Intervenant·e·(s) du laboratoire: Pence
Digital Humanities Summer Institute | Dates de la réunion: June 3–10, 2012 | Date de la conférence: June 6, 2012, 8am
Later published as “RLetters: A Web-Based Application for Text Analysis of Journal Articles”

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Four Conflated ‘Chance’-Like Concepts in Evolutionary Theory

Intervenant·e·(s) du laboratoire: Pence
Indiana Philosophical Association | Dates de la réunion: April 20–21, 2012 | Date de la conférence: April 21, 2012, 2pm

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Biology Meets Metaphysics? The Causalist/Statisticalist Debate

Intervenant·e·(s) du laboratoire: Pence
PhiloSTEM-3 | Dates de la réunion: April 13–14, 2012 | Date de la conférence: April 14, 2012, 1pm

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The Early History of Chance in Evolution

Intervenant·e·(s) du laboratoire: Pence
Integrated History and Philosophy of Science (&HPS4) | Dates de la réunion: March 15–18, 2012 | Date de la conférence: March 17, 2012, 11am
Later published as “The Early History of Chance in Evolution.”

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evoText: Digital Humanities Meets Evolutionary Biology

Intervenant·e·(s) du laboratoire: Pence
Notre Dame Graduate Research Symposium (received two awards) | Dates de la réunion: 24th February 2012, 2pm–5pm
Later published as “evoText: A New Tool for Analyzing the Biological Sciences”

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The Conflation of “Chance” in Evolution

Intervenant·e·(s) du laboratoire: Pence
ISHPSSB 2011 | Dates de la réunion: July 10–15, 2011 | Date de la conférence: July 11, 2011, 11am

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The Statistical Philosophy of W.F.R. Weldon

Intervenant·e·(s) du laboratoire: Pence
ISHPSSB 2009 | Dates de la réunion: July 12–16, 2009 | Date de la conférence: July 13, 2009
Later published as “‘Describing Our Whole Experience’: The Statistical Philosophies of W.F.R. Weldon and Karl Pearson.”

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